compiler errors - gcc : unknown type name -
i trying install linear solver called pdslin on ubuntu16.04 lts machine. installed dependencies when running make pdslin got warnings , errors. not understand -c in gcc -c come , whether reason of not identifying "superlu_options_t" variable.
(cd src; make lib;) make[1]: entering directory '/home/afrah/pdslin/src' (make all; cd slu; make lib) make[2]: entering directory '/home/afrah/pdslin/src' gcc -c -i/home/afrah/pdslin/include -i/home/afrah/superlu_5.2.0/src -i/usr/include -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i/home/afrah/superlu_dist_5.1.2/src -dscotch_order -i/usr/local/include -i/usr/share/parmetis/include -i/usr/share/mpich-install/include -i/home/afrah/petsc/include -i/home/afrah/petsc/arch-linux2-c-debug/include -wall -dwith_hips -dwith_petsc pdslin_graph.c pdslin_graph.c: in function ‘a_plus_at_comprow_loc_with_diag’: pdslin_graph.c:51:26: warning: variable ‘sz_tcolind_loc’ set not used [-wunused-but-set-variable] int_t sz_tcolind_send, sz_tcolind_loc, sz_tcolind_recv; ^ pdslin_graph.c: in function ‘perm_snodes’: pdslin_graph.c:898:22: warning: passing argument 1 of ‘parmetis_v3_nodend’ incompatible pointer type [-wincompatible-pointer-types] parmetis_v3_nodend(disp, m_rowptr, m_colind, &numflag, options, ^ // similar warnings pdslin_graph.c:1034:9: warning: variable ‘numflag’ set not used [-wunused-but-set-variable] int numflag; ^ gcc -c -i/home/afrah/pdslin/include -i/home/afrah/superlu_5.2.0/src -i/usr/include -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i/home/afrah/superlu_dist_5.1.2/src -dscotch_order -i/usr/local/include -i/usr/share/parmetis/include -i/usr/share/mpich-install/include -i/home/afrah/petsc/include -i/home/afrah/petsc/arch-linux2-c-debug/include -wall -dwith_hips -dwith_petsc pdslin_wrapper.c gcc -c -i/home/afrah/pdslin/include -i/home/afrah/superlu_5.2.0/src -i/usr/include -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i/home/afrah/superlu_dist_5.1.2/src -dscotch_order -i/usr/local/include -i/usr/share/parmetis/include -i/usr/share/mpich-install/include -i/home/afrah/petsc/include -i/home/afrah/petsc/arch-linux2-c-debug/include -wall -dwith_hips -dwith_petsc pdslin_perm.c pdslin_perm.c: in function ‘comp_perm’: pdslin_perm.c:113:24: warning: passing argument 1 of ‘parmetis_v3_nodend’ incompatible pointer type [-wincompatible-pointer-types] parmetis_v3_nodend(disp, rowptr_l, colind_l, &numflag, options, ^ in file included pdslin_perm.c:14:0: /home/afrah/superlu_dist_5.1.2/src/parmetis.h:102:13: note: expected ‘idx_t * {aka long int *}’ argument of type ‘int *’ int __cdecl parmetis_v3_nodend( ^ pdslin_perm.c:113:30: warning: passing argument 2 of ‘parmetis_v3_nodend’ incompatible pointer type [-wincompatible-pointer-types] parmetis_v3_nodend(disp, rowptr_l, colind_l, &numflag, options, ^ in file included pdslin_perm.c:14:0: /home/afrah/superlu_dist_5.1.2/src/parmetis.h:102:13: note: expected ‘idx_t * {aka long int *}’ argument of type ‘int *’ int __cdecl parmetis_v3_nodend( ^ pdslin_perm.c:113:40: warning: passing argument 3 of ‘parmetis_v3_nodend’ incompatible pointer type [-wincompatible-pointer-types] parmetis_v3_nodend(disp, rowptr_l, colind_l, &numflag, options, ^ // warnings gcc -c -i/home/afrah/pdslin/include -i/home/afrah/superlu_5.2.0/src -i/usr/include -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i/home/afrah/superlu_dist_5.1.2/src -dscotch_order -i/usr/local/include -i/usr/share/parmetis/include -i/usr/share/mpich-install/include -i/home/afrah/petsc/include -i/home/afrah/petsc/arch-linux2-c-debug/include -wall -dwith_hips -dwith_petsc pdslin_util.c in file included pdslin_util.c:11:0: /home/afrah/pdslin/include/pdslin_slu.h:49:24: error: unknown type name ‘superlu_options_t’ void get_perm_c_dist_t(superlu_options_t *options, int_t pnum, int_t ispec, s ^ /home/afrah/pdslin/include/pdslin_slu.h:70:24: error: unknown type name ‘superlu_options_t’ int_t pdslin_symbfact( superlu_options_t *options, /* input options */ ^ pdslin_util.c: in function ‘a_plus_at’: pdslin_util.c:116:9: warning: variable ‘nnz_loc’ set not used [-wunused-but-set-variable] int_t nnz_loc; /* number of local nonzeros in matrix */ ^ pdslin_util.c:107:26: warning: variable ‘sz_tcolind_loc’ set not used [-wunused-but-set-variable] int_t sz_tcolind_send, sz_tcolind_loc, sz_tcolind_recv; ^ pdslin_util.c: in function ‘pdslin_print_stat’: pdslin_util.c:1047:13: warning: format ‘%ld’ expects argument of type ‘long int’, argument 4 has type ‘long long int’ [-wformat=] printf( " domain dim : (%.2lf, %.2lf ) %ld / %ld, %ld\n", ^ pdslin_util.c:1047:13: warning: format ‘%ld’ expects argument of type ‘long int’, argument 5 has type ‘long long int’ [-wformat=] pdslin_util.c:1047:13: warning: format ‘%ld’ expects argument of type ‘long int’, argument 6 has type ‘long long int’ [-wformat=] pdslin_util.c:1049:13: warning: format ‘%ld’ expects argument of type ‘long int’, argument 4 has type ‘long long int’ [-wformat=] printf( " domain nnz : (%.2lf, %.2lf ) %ld / %ld, %ld\n", ^ // warnings makefile:103: recipe target 'pdslin_util.o' failed make[2]: *** [pdslin_util.o] error 1 make[2]: leaving directory '/home/afrah/pdslin/src' make[2]: entering directory '/home/afrah/pdslin/src/slu' gcc -c -i/home/afrah/pdslin/include -i/home/afrah/superlu_5.2.0/src -i/usr/include -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i/home/afrah/superlu_dist_5.1.2/src -dscotch_order -i/usr/local/include -i/usr/share/parmetis/include -i/usr/share/mpich-install/include -i/home/afrah/petsc/include -i/home/afrah/petsc/arch-linux2-c-debug/include -wall -dwith_hips -dwith_petsc get_perm_c.c get_perm_c.c:49:11: error: unknown type name ‘superlu_options_t’ superlu_options_t *options, ^ get_perm_c.c:167:19: error: unknown type name ‘superlu_options_t’ get_perm_c_dist_t(superlu_options_t *options, int_t pnum, int_t ispec, superm ^ makefile:41: recipe target 'get_perm_c.o' failed make[2]: *** [get_perm_c.o] error 1 make[2]: leaving directory '/home/afrah/pdslin/src/slu' makefile:46: recipe target 'lib' failed make[1]: *** [lib] error 2 make[1]: leaving directory '/home/afrah/pdslin/src' makefile:8: recipe target 'all' failed make: *** [all] error 2 this makefile:
# # top directory make.inc # # on hopper: % module load cray-petsc loads cray-tpsl, including pt-schotch , parmetis. ######################################################################## # home directory, software located top = /home/afrah/pdslin includedir =/usr/include ######################################################################## # hybrid solver library name lib = $(top)/lib/libhybrid.a ######################################################################## # libraries: # # mpi/blas libraries l_mpi = /usr/share/mpich-install/lib/libmpi.a -llibmpi i_mpi = -i/usr/share/mpich-install/include l_blas = -llibblas -lliblapack ######################################################################## # make utility make = make ######################################################################## # archiver , flags build library arch = /usr/bin/ar archflags = -cr ranlib = /usr/bin/ranlib ######################################################################## # c compiler , flags cc = gcc flags = -wall -dwith_hips -dwith_petsc flags = -wall -dwith_hips -dwith_petsc ######################################################################## # fortran compiler , flags fc = mpif90 flib = -pgf90libs fflags = -fast fflags = -g ######################################################################## # linker used link example program library #linker = /usr/share/mpich-install/bin/mpicc -wl,--allow-multiple-definition linker = cc -wl,--allow-multiple-definition ######################################################################## # c++ compiler (this not needed standard compilation) cpp = mpicxx #################################################################### #l_ppart = -l/usr/share/parmetis/lib/libparmetis -lparmetis #i_ppart = -i/usr/local/include l_ppart = -l/usr/local/lib -llibscotch -llibptscotch \ -l/usr/local/lib -lptscotcherr -llibscotchmetis -lptscotchparmetis i_ppart = -dscotch_order -i/usr/local/include #------------------------------------------------------# # metis library, , header files l_metis = -l/usr/share/parmetis/lib/libmetis -lmetis i_metis = -i/usr/share/parmetis/include #------------------------------------------------------# # superlu_dist library, , header files (hopper: module load superlu_dist) # sludist = /global/common/hopper2/acts/superlu/superlu_dist/2.5 # l_sludist = -l$(sludist)/craypgi-xe6_o/lib -lsuperlu_dist_2.5 # i_sludist = -ddebuglevel=0 -dprntlevel=1 -dadd_ -duse_vendor_blas -i$(sludist)/src sludist = /home/afrah/superlu_dist_5.1.2 i_sludist = -ddebuglevel=0 -dprntlevel=0 -dadd_ -duse_vendor_blas -i$(sludist)/src l_sludist = -l$(sludist)/lib -llibsuperlu_dist.so #------------------------------------------------------# # petsc library, , header files # double version i_petsc = -i/home/afrah/petsc/include \ -i/home/afrah/petsc/arch-linux2-c-debug/include l_petsc = -l/home/afrah/petsc/arch-linux2-c-debug/lib -llibpetsc #------------------------------------------------------# # other optional libraries # serial superlu l_slu = -l/home/afrah/superlu_5.2.0/lib -llibsuperlu_5.2.a i_slu = -i/home/afrah/superlu_5.2.0/src ######################################################################## ######################################################################## # accumulate includes , libraries inc = -i$(top)/include $(i_slu) -i$(includedir) $(i_sludist) $(i_ppart) $(i_metis) $(i_mpi) $(i_petsc) libs = $(lib) $(l_slu) $(l_sludist) $(l_ppart) $(l_metis) $(l_blas) $(l_mpi) $ (l_petsc) zlibs = $(lib) $(l_sludist) $(l_ppart) $(l_metis) $(l_blas) $(l_mpi) $(l_slu) $(l_petsc)
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